3NUR

Crystal structure of a putative amidohydrolase from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb3NUR/pdb

Classification: HYDROLASE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-07-07 Released: 2011-07-13
Deposition Author(s): Qiu, W., Lam, R., Romanov, V., Lam, K., Soloveychik, M., Pai, E.F., Chirgadze, N.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.196
R-Value Work: 0.169
R-Value Observed: 0.171

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of a putative amidohydrolase from Staphylococcus aureus

Qiu, W., Lam, R., Romanov, V., Lam, K., Soloveychik, M., Pai, E.F., Chirgadze, N.Y.

To be published.

Macromolecule Content

Total Structure Weight: 41.1 kDa
Atom Count: 2,722
Modelled Residue Count: 305
Deposited Residue Count: 357
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amidohydrolase	A	357	Staphylococcus aureus	Mutation(s): 0 Gene Names: SAOG_01574, SAV2580 EC: 3.5.1
UniProt
Find proteins for A0A0H3K164 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3K164 Go to UniProtKB: A0A0H3K164
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3K164
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.196
R-Value Work: 0.169
R-Value Observed: 0.171
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.289	α = 90
b = 99.16	β = 90
c = 92.126	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHARP	phasing
BUSTER	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-07-13

Deposition Author(s):

Soloveychik, M.

Chirgadze, N.Y.

Revision History (Full details and data files)

Version 1.0: 2011-07-13
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.